Lab members, 2020
Ph.D., University of California, Davis
Dr. Kim VanderWaal is an Assistant Professor in the Department of Veterinary Population Medicine at the College of Veterinary Medicine, University of Minnesota. She is a disease ecologist and epidemiologist who has worked extensively on understanding transmission of pathogens in animal populations. Her research interests relate to the use of network analysis, mathematical modeling, phylogenetic approaches and animal movement data to improve surveillance, prevention, and control of infectious pathogens of agro-ecological systems. She is also studies the causes and consequences of pathogen genetic diversity, with a particular focus on understanding how genetic diversity can be harnessed to track the spread of viruses and how evolution and immunology interact to drive the epidemiology and emergence of viral strains.
DrPH, Universidade Federal da Bahia
MSc, Fundação Oswaldo Cruz
DVM, Universidade Federal do Paraná
Igor is interested in epidemiology of infectious diseases, both in humans and animals. He has experience with the epidemiology of human leptospirosis and arboviral circulation in an urban setting of a developing country. His current research projects include 1) the forecast of PRRS/PED occurrence in American swine farms and 2) finding epidemiological patterns of the occurrence of similar co-circulating strains of PRRS in the US.
PhD, University of Prince Edward Island, Canada
MSc, University of Nairobi, Kenya
BVetMed, University of Nairobi, Kenya
Dennis's research interests include using molecular tools, applied-epidemiology and One-Health concepts to enhance decision making in addressing threats and challenges in communities. His current research employs statistical & phylodynamic modelling and machine learning techniques to understand the epidemiology of porcine respiratory and reproductive syndrome virus (PRRSV), anti-microbial resistance (AMR) in animal populations, and contact networks/animal movements. His research outputs support resilient and sustainable livelihoods through data-driven decisions for strategic interventions and policy development.
Umanga is interested in infectious disease epidemiology. Her current research revolves around characterizing challenges and elucidating the epidemiology of foot-and-mouth disease in endemic settings in Asia, mainly focusing on Vietnam and India. This includes identifying high risk areas and risk factors for the disease using Bayesian spatial temporal models and the spatial temporal changes of the FMD virus with Bayesian phylogenetic data analysis. Her previous work was on utilizing regression analysis and participatory methods to identify the risk factors of foot and mouth Disease in Sri Lanka.
Nakarin 'Son' Pamornchainavakul
Ph.D. student, Veterinary Medicine
DVM, Chulalongkorn University, Thailand
Nakarin is interested in pathogen evolution, especially viruses causing infectious disease in livestock. His previous work explored the global macroevolutionary history of Foot-and-Mouth disease virus. Now, he is working on PRRSV transmission dynamics in the U.S. swine industry by integrating bioinformatic and epidemiologic approaches. His current research projects include 1) the estimation of farm-level reproduction numbers for PRRSV using sequence-based transmission tree analysis and 2) investigating PRRSV-host interaction under different immunologic pressures.
Masters student, Data Science
B.Tech in Computer Science, National Institute of Technology, Karnataka, India
As a Graduate Research assistant, Rahul is working on predicting the outbreak of PRRS and PED virus in sow farms. He works with our team to formulate prediction questions as a spatiotemporal network node classification problem where spatial environmental factors and the movements of herds between farms are used to predict outbreaks. Before pursuing his masters, Rahul holds some work experience in the startup industry culture. His area of work includes Deep Learning, Machine Learning, SpatioTemporal Data Mining and Artificial Intelligence. His hobbies include playing badminton, Theatre acting, Beatboxing and riding his motorcycle.
Former Lab Members
Ph.D. Biology, University of Notre Dame
B.A. Biology and Classical Civilizations, Oberlin College
Current position: Research associate, University of Minnesota
Liz's research focuses on the epidemiology of bacterial antimicrobial resistance at the wildlife-livestock interface. Her current research projects include 1) using metagenomic sequencing to understand the role anthropogenic sources may play in the dissemination of antimicrobial resistance genes wild raptors and 2) assessing the role giraffe social behavior plays in the acquisition and maintenance of resistant commensal E. coli. Other research interests include animal behavior, the microbiome, and wildlife disease ecology.
Ph.D. Graduate, 2020
Ph.D. Comparative and Molecular Biosciences, University of Minnesota
DVM, University of Madison
B.A. Biology, University of Virginia
Current position: Post-doc, Centers for Disease Control (CDC)
Anna is interested in the epidemiology of infectious diseases of livestock, primarily diseases which disproportionately affect developing countries. Her current research is focused on exploring the epidemiology of foot and mouth disease among cattle in Uganda using regression, machine learning, and phylogenetic methods.
MSc graduate, University of Minnesota, Bioinformatics & Computational Biology, 2019
BSc. McGill University, Mathematics and Computer Science
Current position: Data Scientist, C.H. Robinson